代码可用的所有模块
- mindsponge.cell.basic
- mindsponge.cell.equivariant
- mindsponge.cell.msa
- mindsponge.cell.transition
- mindsponge.cell.triangle
- mindsponge.common.geometry
- mindsponge.common.utils
- mindsponge.data_transform.data_transform
- mindsponge.metrics.metrics
- mindsponge.metrics.structure_violations
- sponge.colvar.atoms.all
- sponge.colvar.atoms.atoms
- sponge.colvar.atoms.center
- sponge.colvar.atoms.get
- sponge.colvar.atoms.group
- sponge.colvar.atoms.position
- sponge.colvar.atoms.vector
- sponge.colvar.basic.angle
- sponge.colvar.basic.constant
- sponge.colvar.basic.distance
- sponge.colvar.basic.torsion
- sponge.colvar.basic.volume
- sponge.colvar.colvar
- sponge.colvar.function.combine
- sponge.colvar.function.cosine
- sponge.colvar.function.function
- sponge.colvar.function.sine
- sponge.colvar.function.transform
- sponge.colvar.get
- sponge.colvar.group
- sponge.control.barostat
- sponge.control.constraint
- sponge.control.constraint.constraint
- sponge.control.constraint.lincs
- sponge.control.constraint.settle
- sponge.control.controller
- sponge.control.integrator
- sponge.control.integrator.brownian
- sponge.control.integrator.integrator
- sponge.control.integrator.leapfrog
- sponge.control.integrator.velocityverlet
- sponge.control.thermostat
- sponge.control.thermostat.berendsen
- sponge.control.thermostat.langevin
- sponge.control.thermostat.thermostat
- sponge.core.analysis.analysis
- sponge.core.simulation.energy
- sponge.core.simulation.force
- sponge.core.simulation.run
- sponge.core.simulation.simulation
- sponge.core.sponge
- sponge.function.functions
- sponge.function.operations
- sponge.function.quaternion
- sponge.function.units
- sponge.metrics.metrics
- sponge.optimizer.dynamics
- sponge.optimizer.md
- sponge.optimizer.steepest
- sponge.optimizer.updater
- sponge.partition.distance
- sponge.partition.fullconnect
- sponge.partition.grids
- sponge.partition.index
- sponge.partition.neighbourlist
- sponge.potential.energy.energy
- sponge.potential.potential
- sponge.system.molecule.molecule
- sponge.system.residue.residue