Computing Jacobian and Hessian Matrices Using Functional Transformations

Jacobian Matrices

Before describing the methods provided by MindSpore to compute Jacobian matrices, an introduction to Jacobian matrices is first given.

We first define a mapping $\textbf{f}$:

\[R^{n} \longrightarrow R^{m}\]

We use the notation $\longmapsto$ here to denote the mapping between the elements of the set, and bold all the symbols representing vectors:

\[\textbf{x} \longmapsto \textbf{f}(\textbf{x})\]

where $\textbf{x} = (x_{1}, x_{2},\dots, x_{n})$，$\textbf{f(x)} = (f_{1}(\textbf{x}), f_{2}(\textbf{x}),\dots,f_{m}(\textbf{x}))$.

We denote the set consisting of all mappings from $R^{n}$ to $R^{m}$ as $F_{n}^{m}$. Here, we refer to a mapping from one function (mapping) set to another function (mapping) set as an operation. It is easy to obtain that the gradient operation $\nabla$ is an operation of n simultaneous partial derivatives on the set of functions $F_{n}^{1}$, defined as a mapping from the set of functions $F_{n}^{1}$ to $F_{n}^{n}$:

\[\nabla：F_{n}^{1} \longrightarrow F_{n}^{n}\]

The generalized gradient operation, $\partial$, is defined as the simultaneous operation of n partial derivatives on the set of functions $F_{n}^{m}$.

\[\partial: F_{n}^{m} \longrightarrow F_{n}^{m \times n}\]

The Jacobian matrix is the result obtained by applying the operation $\partial$ to $\textbf{f}$, i.e.

\[\textbf{f} \longmapsto \partial \textbf{f} = (\frac{\partial \textbf{f}}{\partial x_{1}}, \frac{\partial \textbf{f}}{\partial x_{2}}, \dots, \frac{\partial \textbf{f}}{\partial x_{n}})\]

Obtain the Jacobian matrix:

\[\begin{split}J_{f} = \begin{bmatrix} \frac{\partial f_{1}}{\partial x_{1}} &\frac{\partial f_{1}}{\partial x_{2}} &\dots &\frac{\partial f_{1}}{\partial x_{n}} \\ \frac{\partial f_{2}}{\partial x_{1}} &\frac{\partial f_{2}}{\partial x_{2}} &\dots &\frac{\partial f_{2}}{\partial x_{n}} \\ \vdots &\vdots &\ddots &\vdots \\ \frac{\partial f_{m}}{\partial x_{1}} &\frac{\partial f_{m}}{\partial x_{2}} &\dots &\frac{\partial f_{m}}{\partial x_{n}} \end{bmatrix}\end{split}\]

Applications of Jacobian matrix: In the forward mode of automatic differentiation, for each forward propagation, we can work out one row of the Jacobian matrix. In the inverse mode of automatic differentiation, for each backward propagation, we can compute a row of the Jacobian matrix.

Computing the Jacobian Matrix

It is difficult to compute Jacobian matrices efficiently using standard automatic differentiation systems, but MindSpore provides methods that can compute Jacobian efficiently, which are described below.

First we define the function forecast, which is a simple linear function with a non-linear activation function.

import time
import mindspore
from mindspore import ops
from mindspore import jacrev, jacfwd, vmap, vjp, jvp, grad
import numpy as np

mindspore.set_seed(1)

def forecast(weight, bias, x):
    return ops.dense(x, weight, bias).tanh()

Next, we construct some data: a weight tensor weight, a bias tensor bias, and an input vector x.

D = 16
weight = ops.randn(D, D)
bias = ops.randn(D)
x = ops.randn(D)

The function forecast does the following mapping transformation on the input vector x, $R^{D}\overset{}{\rightarrow}R^{D}$. MindSpore computes the vector-jacobian product during automatic differentiation. To compute the full Jacobian matrix for the mapping $R^{D}\overset{}{\rightarrow}R^{D}$, we compute it one row at a time using different unit vectors.

def partial_forecast(x):
    return ops.dense(x, weight, bias).tanh()

_, vjp_fn = vjp(partial_forecast, x)

def compute_jac_matrix(unit_vectors):
    jacobian_rows = [vjp_fn(vec)[0] for vec in unit_vectors]
    return ops.stack(jacobian_rows)


unit_vectors = ops.eye(D)
jacobian = compute_jac_matrix(unit_vectors)
print(jacobian.shape)
print(jacobian[0])

(16, 16)
[-3.2045446e-05 -1.3530695e-05  1.8671712e-05 -9.6547810e-05
  5.9755850e-05 -5.1343523e-05  1.3528993e-05 -4.6988782e-05
 -4.5517798e-05 -6.1188715e-05 -1.6264191e-04  5.5033437e-05
 -4.3497541e-05  2.2357668e-05 -1.3188722e-04 -3.0677278e-05]

In compute_jac_matrix, calculating the jacobian matrix using a for loop row by row is not very efficient. MindSpore provides jacrev to calculate the jacobian matrix, and the implementation of jacrev makes use of vmap, which removes the for loop in compute_jac_matrix and vectorizes the entire calculation process. The argument grad_position to jacrev specifies the Jacobian matrix with respect to which the output is computed.

from mindspore import jacrev
jacrev_jacobian = jacrev(forecast, grad_position=2)(weight, bias, x)
assert np.allclose(jacrev_jacobian.asnumpy(), jacobian.asnumpy())

The performance of compute_jac_matrix and jacrev is compared. Typically, jacrev has better performance because using vmap for vectorization will more fully utilize the hardware to compute multiple sets of data at the same time, reducing the computational overhead for better performance.

Let’s write a function that evaluates the performance of both methods on a microsecond scale.

def perf_compution(func, run_times, *args, **kwargs):
    start_time = time.perf_counter()
    for _ in range(run_times):
        func(*args, **kwargs)
    end_time = time.perf_counter()
    cost_time = (end_time - start_time) * 1000000
    return cost_time


run_times = 500
xp = x.copy()
compute_jac_matrix_cost_time = perf_compution(compute_jac_matrix, run_times, xp)
jac_fn = jacrev(forecast, grad_position=2)
jacrev_cost_time = perf_compution(jac_fn, run_times, weight, bias, x)
print(f"compute_jac_matrix run {run_times} times, cost time {compute_jac_matrix_cost_time} microseconds.")
print(f"jacrev run {run_times} times, cost time {jacrev_cost_time} microseconds.")

compute_jac_matrix run 500 times, cost time 12942823.04868102 microseconds.
jacrev run 500 times, cost time 909309.7001314163 microseconds.

Run compute_jac_matrix and jacrev 500 times respectively and count the time consumption.

The following calculates the percentage performance improvement of using jacrev to compute the Jacobian matrix compared to using compute_jac_matrix.

def perf_cmp(first, first_descriptor, second, second_descriptor):
    faster = second
    slower = first
    gain = (slower - faster) / slower
    if gain < 0:
        gain *= -1
    final_gain = gain*100
    print(f" Performance delta: {final_gain:.4f} percent improvement with {second_descriptor}. ")

perf_cmp(compute_jac_matrix_cost_time, "for loop", jacrev_cost_time, "jacrev")

 Performance delta: 92.9744 percent improvement with jacrev.

It is also possible to compute the Jacobian matrix of the output with respect to the model parameters weight and bias by specifying the parameter grad_position of jacrev.

jacrev_weight, jacrev_bias = jacrev(forecast, grad_position=(0, 1))(weight, bias, x)
print(jacrev_weight.shape)
print(jacrev_bias.shape)

(16, 16, 16)
(16, 16)

Inverse Mode Computation of Jacobian Matrix vs Forward Mode Computation of Jacobian Matrix

MindSpore provides two APIs to compute Jacobian matrices: jacrev and jacfwd, respectively.

jacrev: Automatic differentiation using inverse mode.
jacfwd: Automatic differentiation using forward mode.

jacfwd and jacrev are interchangeable, but they perform differently in different scenarios.

In general, if one needs to compute the Jacobian matrix of a function $R^{n}\overset{}{\rightarrow}R^{m}$, jacfwd performs better in terms of performance when the size of the output vector of that function is larger than the size of the input vector (i.e., m > n), otherwise jacrev performs better in terms of performance.

The following is a non-rigorous argument for this conclusion, in that the forward mode auto-differentiation (computing the Jacobian - vector product) is computed column by column, and in the reverse mode auto-differentiation (computing the vector - Jacobian product) is computed row by row for the Jacobian matrix. Assuming that the size of the Jacobian matrix to be computed is m rows and n columns, we recommend using jacfwd to compute the Jacobian matrix column-by-column if m > n, and vice versa if m < n, we recommend using jacrev to compute the Jacobian matrix row-by-row.

Hessian Matrix

Before describing the methods provided by MindSpore to compute the Hessian matrix, the Hessian matrix is first introduced.

The Hessian matrix can be obtained from the composite of the gradient operation $\nabla$ and the generalized gradient operation $\partial$, namely

\[\nabla \circ \partial: F_{n}^{1} \longrightarrow F_{n}^{n} \longrightarrow F_{n \times n}^{n}\]

Applying this composite operation to f yields that

\[f \longmapsto \nabla f \longmapsto J_{\nabla f}\]

The Hessian matrix is obtained:

\[\begin{split}H_{f} = \begin{bmatrix} \frac{\partial (\nabla _{1}f)}{\partial x_{1}} &\frac{\partial (\nabla _{1}f)}{\partial x_{2}} &\dots &\frac{\partial (\nabla _{1}f)}{\partial x_{n}} \\ \frac{\partial (\nabla _{2}f)}{\partial x_{1}} &\frac{\partial (\nabla _{2}f)}{\partial x_{2}} &\dots &\frac{\partial (\nabla _{2}f)}{\partial x_{n}} \\ \vdots &\vdots &\ddots &\vdots \\ \frac{\partial (\nabla _{n}f)}{\partial x_{1}} &\frac{\partial (\nabla _{n}f)}{\partial x_{2}} &\dots &\frac{\partial (\nabla _{n}f)}{\partial x_{n}} \end{bmatrix} = \begin{bmatrix} \frac{\partial ^2 f}{\partial x_{1}^{2}} &\frac{\partial ^2 f}{\partial x_{2} \partial x_{1}} &\dots &\frac{\partial ^2 f}{\partial x_{n} \partial x_{1}} \\ \frac{\partial ^2 f}{\partial x_{1} \partial x_{2}} &\frac{\partial ^2 f}{\partial x_{2}^{2}} &\dots &\frac{\partial ^2 f}{\partial x_{n} \partial x_{2}} \\ \vdots &\vdots &\ddots &\vdots \\ \frac{\partial ^2 f}{\partial x_{1} \partial x_{n}} &\frac{\partial ^2 f}{\partial x_{2} \partial x_{n}} &\dots &\frac{\partial ^2 f}{\partial x_{n}^{2}} \end{bmatrix}\end{split}\]

It is easy to see that the Hessian matrix is a real symmetric matrix.

Application of Hessian matrix: using the Hessian matrix, we can explore the curvature of the neural network at a certain point, providing a numerical basis for whether the training converges.

Computing the Hessian Matrix

In MindSpore, we can compute the Hessian matrix by any combination of jacfwd and jacrev.

Din = 32
Dout = 16
weight = ops.randn(Dout, Din)
bias = ops.randn(Dout)
x = ops.randn(Din)

hess1 = jacfwd(jacfwd(forecast, grad_position=2), grad_position=2)(weight, bias, x)
hess2 = jacfwd(jacrev(forecast, grad_position=2), grad_position=2)(weight, bias, x)
hess3 = jacrev(jacfwd(forecast, grad_position=2), grad_position=2)(weight, bias, x)
hess4 = jacrev(jacrev(forecast, grad_position=2), grad_position=2)(weight, bias, x)

np.allclose(hess1.asnumpy(), hess2.asnumpy())
np.allclose(hess2.asnumpy(), hess3.asnumpy())
np.allclose(hess3.asnumpy(), hess4.asnumpy())

True

Computing the Batch Jacobian Matrix and the Batch Hessian Matrix

In the examples given above, we are computing the Jacobian matrix of a single output vector with respect to a single input vector. In some cases, you may want to compute the Jacobian matrix of a batch of output vectors with respect to a batch of input vectors, or in other words, given a batch of input vectors with a shape of (b, n) and a function whose mapping relation is $$R^{n}\overset{}{\rightarrow}R^{m}$$. We would expect to get a batch of Jacobian matrices with a shape is (b, m, n).

We can use vmap to compute the batch Jacobian matrix.

batch_size = 64
Din = 31
Dout = 33

weight = ops.randn(Dout, Din)
bias = ops.randn(Dout)
x = ops.randn(batch_size, Din)

compute_batch_jacobian = vmap(jacrev(forecast, grad_position=2), in_axes=(None, None, 0))
batch_jacobian = compute_batch_jacobian(weight, bias, x)
print(batch_jacobian.shape)

(64, 33, 31)

Computing the batch Hessian matrix is similar to computing the batch Jacobian matrix using vmap.

hessian = jacrev(jacrev(forecast, grad_position=2), grad_position=2)
compute_batch_hessian = vmap(hessian, in_axes=(None, None, 0))
batch_hessian = compute_batch_hessian(weight, bias, x)
print(batch_hessian.shape)

(64, 33, 31, 31)

Computing the Hessian-vector Product

The most straightforward way to compute a Hessian-vector product (hvp) is to compute a complete Hessian matrix and dot-product it with vectors. However, MindSpore provides a better way to compute the Hessian-vector product without computing a complete Hessian matrix. Below we describe two ways to compute the Hessian-Vector product.

Combine two reverse mode auto-differential.
Combine reverse mode auto-differentiation with forward mode auto-differentiation.

The following first describes, in MindSpore, how to compute the Hessian-vector product, using a combination of reverse mode auto-differentiation and forward mode auto-differentiation.

def hvp_revfwd(f, inputs, vector):
    return jvp(grad(f), inputs, vector)[1]

def f(x):
    return x.sin().sum()

inputs = ops.randn(128)
vector = ops.randn(128)

result_hvp_revfwd = hvp_revfwd(f, inputs, vector)
print(result_hvp_revfwd.shape)

(128,)

If forward auto-differentiation does not suffice, we can use a combination of reverse mode auto-differentiation and reverse mode auto-differentiation to compute the Hessian-vector product:

def hvp_revrev(f, inputs, vector):
    _, vjp_fn = vjp(grad(f), *inputs)
    return vjp_fn(*vector)

result_hvp_revrev = hvp_revrev(f, (inputs,), (vector,))
print(result_hvp_revrev[0].shape)

(128,)

Computing the Hessian-vector product using the two methods above gives the same result.

assert np.allclose(result_hvp_revfwd.asnumpy(), result_hvp_revrev[0].asnumpy())