mindsponge.common.get_fasta_info

View Source On Gitee
mindsponge.common.get_fasta_info(pdb_path)[source]

Put in a pdb file and get fasta information from it. Return the sequence of the pdb.

Parameters

pdb_path (str) – path of the input pdb.

Returns

fasta(str), fasta of input pdb. The sequence is the order of residues in the protein and has no relationship with residue index, such as “GSHMGVQ”.

Supported Platforms:

Ascend GPU

Examples

>>> from mindsponge.common import get_fasta_info
>>> pdb_path = "YOUR PDB PATH"
>>> fasta = get_fasta_info(pdb_path)
>>> print(fasta)
"GSHMGVQ"