mindsponge.common
===================

.. mscnplatformautosummary::
    :toctree: common
    :nosignatures:
    :template: classtemplate.rst

    mindsponge.common.find_optimal_renaming
    mindsponge.common.get_aligned_seq
    mindsponge.common.get_fasta_info
    mindsponge.common.get_pdb_info
    mindsponge.common.make_atom14_positions

mindsponge.common.geometry
--------------------------

.. mscnplatformautosummary::
    :toctree: common
    :nosignatures:
    :template: classtemplate.rst

    mindsponge.common.apply_to_point
    mindsponge.common.initial_affine
    mindsponge.common.invert_point
    mindsponge.common.invert_rigids
    mindsponge.common.invert_rots
    mindsponge.common.make_transform_from_reference
    mindsponge.common.pre_compose
    mindsponge.common.quat_affine
    mindsponge.common.quat_multiply_by_vec
    mindsponge.common.quat_to_rot
    mindsponge.common.quaternion_from_tensor
    mindsponge.common.quaternion_to_tensor
    mindsponge.common.rigids_from_3_points
    mindsponge.common.rigids_mul_rigids
    mindsponge.common.rigids_mul_rots
    mindsponge.common.rigids_mul_vecs
    mindsponge.common.rots_expand_dims
    mindsponge.common.rots_from_tensor
    mindsponge.common.rots_from_two_vecs
    mindsponge.common.rots_mul_rots
    mindsponge.common.rots_mul_vecs
    mindsponge.common.rots_scale
    mindsponge.common.rots_to_tensor
    mindsponge.common.vecs_cross_vecs
    mindsponge.common.vecs_dot_vecs
    mindsponge.common.vecs_expand_dims
    mindsponge.common.vecs_from_tensor
    mindsponge.common.vecs_robust_norm
    mindsponge.common.vecs_robust_normalize
    mindsponge.common.vecs_scale
    mindsponge.common.vecs_sub
    mindsponge.common.vecs_to_tensor